Scaffold Ga0210003_1001151

Overview

Basic Information

• Taxon OID: 3300024262
• Scaffold ID: Ga0210003_1001151
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23478
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (23.81%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F017335	Metagenome / Metatranscriptome	241	Y
F018962	Metagenome / Metatranscriptome	232	Y
F022460	Metagenome / Metatranscriptome	214	Y
F048317	Metagenome / Metatranscriptome	148	Y
F105240	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210003_100115115	F017335	N/A	MNIKSLTLKNTLSIEETGELYYDLTAPSFTYNRDLGVKGIHYVTMDQAGRIDKIAELYFGGSQYVDAICIVNNIFNPFSVSEGDILVIPNLAQPNLVYRRPNPASRPSVQLAQYTNTDRQSEKDQSRIQRLTQKAKTKKNGVKAPIPPNMLQQGQDAKIYSGGKILLGANLPTRNRNTTN
Ga0210003_100115117	F004606	N/A	MKTHRIFNKGQFVYCLLASHTNPNILLPVKGVILDSKWDPVNPLYQIRIIKLYDNMKFLKQHFFGMNFRHEFENRARKMILKSEDFKTTKALEDRLNDKDRERFYVVIESVMCTKTKIGLSELFEKVQFYMISKNLKEIRDISTRPFFKGPLSLDSPKEFDARYKKGWADKFERNALDINKYLNSLG
Ga0210003_100115118	F008190	AGGA	MEEEHIEFNFIYSSDALRVKTFLGNVPRSMECINYMDIFNKLTKNDFYQFEPSDAVVSSYLMRQLQNAISRNLSTTIFYVLGNLNKETVGGIKQYVESLSTKPITYKIYHSPDINVNGTATLFDDIIEFE
Ga0210003_100115119	F018962	AGG	MIKIILEPARNGVIKKVVDDNHGGGREHFTSTDVYETHEIDKSKYSYIKRFFFDLCDDLGLELGSKFDKDVLDINAQWGSHYEPTAKDIEFKIKRLKNELKELEEWKKNI
Ga0210003_10011513	F105240	N/A	MAISVTEILGTDSLSGSRLVINDNFNVLASEINSMEVYFSPSGGTITNLNNLSSEALRVGLSTILLDINASTFDILTNVKMTGNLNMTGAGIFRNDTNPQTLNSTFAGGSPIPVGTSTAIPAYTMNRVGNATAAAINITLYNGSIGQEIFFICTEGSGDVVISGVANNMVLPGATLNTITLNAIGESVHLLAVDNGSGVAVWFLVGGTGYVIS
Ga0210003_10011515	F022460	GAGG	MATVKNNNTGFPSLYRATREEGWVLKNTGYDYADNLLRNTMSNYMFGNPHLRKFLENYLNPIMVFYINRVKYLRIYFNFAVPKWYQKIN
Ga0210003_10011517	F048317	N/A	MIRDIYSRDIESTNYNDSTLEVSDTLSQLILKIENCLFTRKGDVLGAPGMGANLNDLIFSLVLNENTIQNQINNQITAYCLPNIAGFTVNCTVSFFSTAERDGAFVDIFVNEQRVIGALF