NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210003_1000231

Scaffold Ga0210003_1000231


Overview

Basic Information
Taxon OID3300024262 Open in IMG/M
Scaffold IDGa0210003_1000231 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49655
Total Scaffold Genes90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (12.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.622Long. (o)18.254Alt. (m)Depth (m)437
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022610Metagenome / Metatranscriptome213Y
F041654Metagenome / Metatranscriptome159N
F048852Metagenome / Metatranscriptome147Y
F064521Metagenome128Y
F069860Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0210003_100023114F069860N/AMKYPIILLSLILSLSSCYQYAEQTYPTLDGTYILRSVTVNGTDVLNSEITNETYDDPMTFIYPNPIGPLDTMKVNKSRISISGDRLFAGYYLENGGDHWRNEYHVNITQDFVTGRWVNLNVSYNTPQLNTYRHYVIIEDGLEYLTLECPKQYPDGVEGNEYNYSLTFYREGP
Ga0210003_100023125F022610N/AMKIKLTENQLNKVINRVINEQGLYGSQSDVVDYDLPEFLSDTIILQSVNDWSDVEKSLKEIHKRLIRIEKGLTTAGSHNKAYSTGGDYSFGNKKEKEFETAIDSIDRDEKLKMDIEKLRQDLEL
Ga0210003_10002315F048852N/AMDSAQIKSLIRHALTAIGTLLVLTGLNKWLPLVDLLTANLDSVVLAFEVIIGLVVALFGFFRNKERFQLVEEAETKQV
Ga0210003_100023161F064521N/AMDNVRKNIKKVLKEYDEEELYDYESNFSADDLLKYIASEWDTEMLEIINSKIQDRLSYLYTVSDATSKKEIEGFKRYDE
Ga0210003_10002318F041654GGAMNLEKIVKKNLNELGVKKLTSITESKITRGRLGIISESVNFNSKIQTTKFFNKLFTETNNLVSMGINKTIINEDLIMVLKGLMGNEKANVTSELKKSLLYYLESKLNMDGFEKEVLTQTILEIDEDEFPKIFTDKRFLSRNIADVFTREFGEKYLEGLTDTTKEIVMKQIDTDTFKREIEDKFTTALESLLDSIESNMDSKLRGIRDKVFS
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