Scaffold Ga0210003_1000023

Overview

Basic Information

• Taxon OID: 3300024262
• Scaffold ID: Ga0210003_1000023
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 178535
• Total Scaffold Genes: 213
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (16.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031473	Metagenome / Metatranscriptome	182	N
F068848	Metagenome / Metatranscriptome	124	N
F084833	Metagenome / Metatranscriptome	112	Y
F086290	Metagenome / Metatranscriptome	111	N
F101085	Metagenome / Metatranscriptome	102	N
F103276	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210003_1000023103	F101085	N/A	MSKSIVPQSNNDKSGNSYMMNLINKLLGKIFLKKPVFFGLNDQKITLLVSPTMKIYGVYVSPERLRSRFPFQERKFLNLKDLKLWAEDNEFDISFSAETPKLKRELLISLGDVMVESTGDKERELSVVVMEELKKSKLPDSIKEWAKENPEKFIRNIRHVQNILKR
Ga0210003_1000023115	F084833	N/A	MKKILLILLTLICSVGYSQNLGEIQRHLLNLVNEERSDGGLSTFVTDTLINNGAKIQADYLSTIRSYKQVSHTNPNPKYKTASDRIKIASNSKYDISSENVTAFTYDSTDTDLEIAIQAHNNFMNSKYHKMNVLTENGDYFNSGTILPRYYGCCVVYNEKLNAIIVIQMFPRPNYSN
Ga0210003_100002319	F086290	N/A	MISLYDKLLDNLRPYAVPYEDHPQQSTRDFEYDHPLTGIENDRIVNIDNSSFNIDTIEDLSFDEIQKIHDKLSTASPLTTMREYDEESHRELFTYYKGKKNQYTDKKIPRTSAIHLRNLKNHIQSILFKRKSEIRDQNANELLPTLEKFLEIHKQGNPNIYPDWLRFTFKEVRWGDLYIQPIINLEKLLESGDSILQAKRTRDFISNIWNRLVSATGSSKKTSPSVKTTYVLFEGFKDYMKNVVNKKIKPQIKNLPRGKECVHSIIFRYRSNIEDIEIQIHPRYKRECTDGWNRVNTYDFEHEIEDILSEYGWRKGINYVTSTNRD
Ga0210003_10000233	F031473	N/A	MEEIRELIEKSFTPRVEEDMNGIKVIFTSTVGDGTIWFEPAKRGWSNKPLSTNRYIIVDAELSHVLTFLNRYYQLDESNYHDIRRMFIDIGMDTVDKHTKGEPNE
Ga0210003_100002337	F068848	N/A	MGMSNNKDAETKYGMLFKFMNQSRSNYMGLDLTYDYELLPENRISVDIFAEGNFDLPLRTKQMFRNMFMAFFAKDSKYFNIPKSTVGLLDFNNILLNGERLGDRITIDDNLKKDLVDVESKLKKYYSIDLPDYPQGLYRLESFDNVLETYIEIVDADSLMYTTNINDTKKITLNGNEFNRNTIVDFLDSVDLGSSTGNMLVDPNTIFESISNSIWETSVEGDGASLELFWDKLISNGMNYQNHFMENIGMLSLVNLRSYGGMFNDNMHNYNTESQSEILSIFIGWLETNKGKYKL
Ga0210003_100002344	F103276	N/A	MGTSMEKFLDKTKDDNKIVDMYIDIRKWLQSEGHTTITSQSISKAPMDIWKLMEDLRGEVETLRTTLKRYGILEDDKTYNKWLQTKLLRIDKEFPLIDEKND