Basic Information | |
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Taxon OID | 3300024262 Open in IMG/M |
Scaffold ID | Ga0210003_1000023 Open in IMG/M |
Source Dataset Name | Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 178535 |
Total Scaffold Genes | 213 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (16.43%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
Source Dataset Sampling Location | ||||||||
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Location Name | Baltic Sea | |||||||
Coordinates | Lat. (o) | 58.622 | Long. (o) | 18.254 | Alt. (m) | Depth (m) | 437 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F031473 | Metagenome / Metatranscriptome | 182 | N |
F068848 | Metagenome / Metatranscriptome | 124 | N |
F084833 | Metagenome / Metatranscriptome | 112 | Y |
F086290 | Metagenome / Metatranscriptome | 111 | N |
F101085 | Metagenome / Metatranscriptome | 102 | N |
F103276 | Metagenome / Metatranscriptome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0210003_1000023103 | F101085 | N/A | MSKSIVPQSNNDKSGNSYMMNLINKLLGKIFLKKPVFFGLNDQKITLLVSPTMKIYGVYVSPERLRSRFPFQERKFLNLKDLKLWAEDNEFDISFSAETPKLKRELLISLGDVMVESTGDKERELSVVVMEELKKSKLPDSIKEWAKENPEKFIRNIRHVQNILKR |
Ga0210003_1000023115 | F084833 | N/A | MKKILLILLTLICSVGYSQNLGEIQRHLLNLVNEERSDGGLSTFVTDTLINNGAKIQADYLSTIRSYKQVSHTNPNPKYKTASDRIKIASNSKYDISSENVTAFTYDSTDTDLEIAIQAHNNFMNSKYHKMNVLTENGDYFNSGTILPRYYGCCVVYNEKLNAIIVIQMFPRPNYSN |
Ga0210003_100002319 | F086290 | N/A | MISLYDKLLDNLRPYAVPYEDHPQQSTRDFEYDHPLTGIENDRIVNIDNSSFNIDTIEDLSFDEIQKIHDKLSTASPLTTMREYDEESHRELFTYYKGKKNQYTDKKIPRTSAIHLRNLKNHIQSILFKRKSEIRDQNANELLPTLEKFLEIHKQGNPNIYPDWLRFTFKEVRWGDLYIQPIINLEKLLESGDSILQAKRTRDFISNIWNRLVSATGSSKKTSPSVKTTYVLFEGFKDYMKNVVNKKIKPQIKNLPRGKECVHSIIFRYRSNIEDIEIQIHPRYKRECTDGWNRVNTYDFEHEIEDILSEYGWRKGINYVTSTNRD |
Ga0210003_10000233 | F031473 | N/A | MEEIRELIEKSFTPRVEEDMNGIKVIFTSTVGDGTIWFEPAKRGWSNKPLSTNRYIIVDAELSHVLTFLNRYYQLDESNYHDIRRMFIDIGMDTVDKHTKGEPNE |
Ga0210003_100002337 | F068848 | N/A | MGMSNNKDAETKYGMLFKFMNQSRSNYMGLDLTYDYELLPENRISVDIFAEGNFDLPLRTKQMFRNMFMAFFAKDSKYFNIPKSTVGLLDFNNILLNGERLGDRITIDDNLKKDLVDVESKLKKYYSIDLPDYPQGLYRLESFDNVLETYIEIVDADSLMYTTNINDTKKITLNGNEFNRNTIVDFLDSVDLGSSTGNMLVDPNTIFESISNSIWETSVEGDGASLELFWDKLISNGMNYQNHFMENIGMLSLVNLRSYGGMFNDNMHNYNTESQSEILSIFIGWLETNKGKYKL |
Ga0210003_100002344 | F103276 | N/A | MGTSMEKFLDKTKDDNKIVDMYIDIRKWLQSEGHTTITSQSISKAPMDIWKLMEDLRGEVETLRTTLKRYGILEDDKTYNKWLQTKLLRIDKEFPLIDEKND |
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