Scaffold Ga0210003_1000016

Overview

Basic Information

• Taxon OID: 3300024262
• Scaffold ID: Ga0210003_1000016
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 223235
• Total Scaffold Genes: 259
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (19.31%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002321	Metagenome / Metatranscriptome	571	Y
F045767	Metagenome / Metatranscriptome	152	N
F057390	Metagenome / Metatranscriptome	136	N
F061838	Metagenome / Metatranscriptome	131	N
F066233	Metagenome / Metatranscriptome	127	N
F080617	Metagenome / Metatranscriptome	115	N
F081877	Metagenome / Metatranscriptome	114	N
F099229	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210003_100001610	F080617	AGGA	MGNNKLKWSLEKLFNSLGRNMAMKYYGFDSKYEVVKIINVKTGDEVTDFEGDIDYEVIVKSKDDLPEIFDVKIEPLWRYGKFAQPMDLQFNLEHITKYISPSIIVSLVTPEWKEGDLEYTSVKSFEKKWGRSLDLPADDFQKNPSRWVELSNGSVVDKITGNSFPLMSNGLIDKTEVWNIARIDEDEWWDSLDNNDKQNLTDAFSK
Ga0210003_100001612	F099229	N/A	MDNEIDKIVELGKVLLNTPTLRSIYKDKFEINSIDFEFIEKTTSSQFTSKYEYYIFGATLYTDIQVNFDERIENGELKGYMDIEPELWNYGLDPIYLADIIIPDQILNIILPKGGPRIAIELTIIGDKGQIIWRDDMFGGANGMPMVGLTPKEVN
Ga0210003_100001613	F066233	N/A	MEIEKNIDDELRAEAQEKGKIATKILDALVFSKFGGIEYSMIIRKQRQNSYSSPRTNPIYFEFDVDIDVDKTFEPSPTYDKKYEDYIYEIGEHIERALRYVNLHDYMAEPMFTYVNDNLVDNEIDRLENKLISYLQSQYEGLSYDSIREADIGYYFYKGETDNPYMRVEFVGQPPIIDGDRQSTDTIEEREFFSCEVLEEIMRDLFDRSPLSLSYDGENYTCQ
Ga0210003_100001618	F061838	GGA	MNNMFNKIMPKSYDDIAKYSNMVMDHEVLDGKIKDIELDFEPSKEPIKYGGYEMIQPGTLVINVILNTEGFYEISDSVPAIQDTFKLRPELEADSFLEFNGYEFIKNILFPYIEKKFLRLMGLSLGDVPYVDFNLVNHKGETILTYDEDLDTFIGSKNSSVWKKMS
Ga0210003_1000016213	F057390	N/A	MEYKKIFPDMFDDTDIDVWKNRNIRKEFLSYEWDMMVQEVAPDVFEFPFLNTNFCDNLVSILKTVNWDQVNRWGTPVYSTNLKTFNLEKVMTHLVHDYIFSIVQKEWHLEGKKWKLLQPDNNILKLEKGQDIRMHHDYVHISLYCKLDNDSDGGELVFSKYGKTITPKQGYVYMYPGQITHRYGMKRVSNGDRYFLMTYCTSD
Ga0210003_1000016231	F002321	N/A	MLDLNKEMAWVTFMNNGWQTKWFPVLCPITGEQQEFDGELTMNHCRSQFNNKDNWVSFGIAPTSQMIIENSVRDNL
Ga0210003_100001670	F081877	N/A	MNTKKDMEFKSEEEFNRVAKKAVQILLYVVESKSPILRKLRATNFISKIYGANQNGVVYFEIEVPFTVDDPDHGPFCNELDKILSGIQNTFGNYHLNSNVEFILKTEEGDDMIGFLNSCSFDWTDHEDEYNGKANYGFEYNWSSID
Ga0210003_100001691	F045767	N/A	MFGKNKINKMGIKDSIRKNIQILQEEKKVTLTEEKIVKGRFSMVPKNINKHSTIQNNKTFNVLFNEIRVLKSRGINQKLINENLVQVLSQMFDEEGPRFLDVVKEKLAQYLKSKLQLTDIEQEILVSAIGNTEMDEVSELFNDPRFLAQKISQAYSEDMGGKYSMVNMDNSQEMVKKLEDTFVDKLKPVIGDVNSKMELKLKDIRDNMLS