Scaffold Ga0233439_10009363

Overview

Basic Information

• Taxon OID: 3300024261
• Scaffold ID: Ga0233439_10009363
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 7873
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (41.18%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007003	Metagenome / Metatranscriptome	360	Y
F077769	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233439_1000936310	F007003	N/A	MIRFFTKNIDQKKYTDIINRTIMINAHDGTSNSGYKALEKFKKDWTLNIIPVTEQEDFKVFYNHLDIEVSDGIAWGVTGSKVIYMFINDVKNPFIIRQNIMPLAHELLHAIYQDNVGTYHITRKYDAPEGRAGTRGAAASVIVHDNWYGSKETIKIWIRWGLIWLPITIPYISIKKSKQLYPI
Ga0233439_100093632	F077769	N/A	MGTKIKAKYDGLCKFCGSDWIVGDNIFYQKNPKAICADEKCFNQQGGTLSSFGSYGNKSDVIITKIPDVTVSDSVKQVAEVLQQFVVVAHHLTKSMYPELDVNTHVFGQIRSKMIDQLLYCTEIQKQ