Scaffold Ga0233437_1023515

Overview

Basic Information

• Taxon OID: 3300024259
• Scaffold ID: Ga0233437_1023515
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_200_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 4287
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029400	Metagenome	188	Y
F029745	Metagenome	187	Y
F081218	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233437_10235152	F029745	AGGA	MASKAPRIGDVVKSRVTTESLAGFIVAKEGIHVWVRFFDTKFEDGNSWDVYTRRDTLEVLSRANPC
Ga0233437_10235156	F029400	GGAG	MKIGDLVTFCPEAWGTPLEDRPLGVVMNVEKRWHPDGEIMVTAIFPGDDIPYSTNIKEFEVVNEDW
Ga0233437_10235157	F081218	AGGA	MKVGDFVKWVGGSSHNLRGIVVDRCGHFEDLGPRGEAKVIWDTKGLGSLKQKPGGSWQTASNLKVISSLESEDENR