Scaffold Ga0233438_10028607

Overview

Basic Information

• Taxon OID: 3300024255
• Scaffold ID: Ga0233438_10028607
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 3176
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F003357	Metagenome / Metatranscriptome	492	N
F036785	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233438_100286074	F003357	AGGAGG	MTRTSWIVKQVYTDAKKNLGWLFKIVLLAGGFIAGIKLLMFFNVPKEIMFPMMWIAFILVAVYKWYSMKYDWKKDDSRYDRASKRYMKKLKGGK
Ga0233438_100286076	F000302	AGGAGG	MIGTMTQDTKDRIAEMERQKIDLENQLELLGYSGNLVKMHQIEEEIYEIEDTIRKLLP
Ga0233438_100286079	F036785	GGAG	MKTDKINMVINMSILALLIYLAVAVKSLQKEVFWDKSIMKPAIGEYHGFAEGRVEMKYNVQELLNNALKDAITEQEND