Scaffold Ga0233438_10007454

Overview

Basic Information

• Taxon OID: 3300024255
• Scaffold ID: Ga0233438_10007454
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 8474
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019643	Metagenome / Metatranscriptome	228	Y
F027484	Metagenome	194	Y
F065685	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233438_1000745417	F065685	GAG	MKPVVGIGSNTKYGRVLKIQSNGVVVENSRGEKEMVSFRKIENQLKGSEK
Ga0233438_1000745419	F019643	N/A	KTGTLELIFSTEKEPYDACRRVIHEFNSNDELDEYMYLDERGYRGYDTADTTTFVVDTNEILRKEGYIK
Ga0233438_100074544	F027484	AGGA	MVNNDYLVDTSYMDDSGSYCDFLPIKGEDHLGFKSFKLKSRADDAYKIQKKLAKFNLAPQIITEVCKIPYSYDPELLKYWTPDATVTSWGYVTEKAMMLDIEETPYDQLQHLVDKIKQKAGLKFWDCHWTNIGYIKDSLVCIDTGKESFTPYCNAWGFIEPGPKCPYCNEYQCYCSINYEDELCHI