NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233438_10002799

Scaffold Ga0233438_10002799


Overview

Basic Information
Taxon OID3300024255 Open in IMG/M
Scaffold IDGa0233438_10002799 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)16771
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (16.67%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.5847Long. (o)-123.5008Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003835Metagenome / Metatranscriptome466Y
F008239Metagenome / Metatranscriptome336Y
F010393Metagenome / Metatranscriptome304N
F017728Metagenome / Metatranscriptome239Y
F019559Metagenome / Metatranscriptome229Y
F025148Metagenome / Metatranscriptome203N
F053650Metagenome / Metatranscriptome141N
F062719Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0233438_100027991F010393GGCGGMMSARSKRTGGGSGGAFIGFDEKDIKKEFERAFKELENLHDGVTTAQIRRIARKSLKPMVKAYKDEITNISSGTFKVYRNGGIYAEITKGQLKKSMGIITTRVNRGATFASLQVGPRVKRTFSDPEKGGWFAHFLEYGYLRDGQYSGPNKGFAKRARTRNSGGVGNEFKRLMRG
Ga0233438_1000279916F003835N/AMKIDLKVRNQIAQLIVDMEVGESKPIRKHEMVPVIKEVNDTTLIGHAIRFVKNADDEVIALKKYRKTAIEKRFETNT
Ga0233438_1000279923F062719GGAMTKQEIFDQPIWPSRLIFNAKLLFGKAWKDCNEDERLTIRCHILGINKNEIK
Ga0233438_1000279924F019559N/AMNEQAFNKLMGYPMETIEKLVKQAKEINRNRIVDLNNRDLKENGIEND
Ga0233438_1000279925F008239N/AMREILIEMYEKLWNADKDKWDWNVILKDTLEKLETFNTKE
Ga0233438_1000279927F053650N/AMKKLIRKRRHMAFVRRYIIELQWDSLNIMLVASKTQWNDDIVKSLDNNARLIRKYERRARWLKF
Ga0233438_1000279929F025148N/AMANVDFAKGHGTILSGSVKYARLTNESGPDGMSEKYGCDLYLDEASTKQLNDLNILDHVRAKDPQGNFKHEEPVVKIKSINIPKGYLANRQIFDGLIGDGSEIRANVWIKKWEHKGKKGLSVWLSAYVITNLIEYATNDSDALFEGLPDVGELMPNQGNVPTSKPNVATATANDAFGESSDDLPF
Ga0233438_100027998F017728N/AMYYTTMTNDSVHYKPNMEPVDDISVGDIIEMTRTGKEFLVESITPSGIVLKECTTYISFSRSALNERLKRNLAIHKSI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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