Scaffold Ga0233438_10002495

Overview

Basic Information

• Taxon OID: 3300024255
• Scaffold ID: Ga0233438_10002495
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 18331
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (39.39%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032087	Metagenome / Metatranscriptome	181	Y
F051534	Metagenome / Metatranscriptome	144	N
F058510	Metagenome / Metatranscriptome	135	N
F070056	Metagenome / Metatranscriptome	123	N
F076587	Metagenome / Metatranscriptome	118	N
F083373	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233438_1000249512	F058510	N/A	MLSQETEVNFKLARYADSLPVEVCVTFAAADSKKRPFIEGVIVNPSPEIYDRLNNPATSMRCYCHSDMSLQQQQETIANIEPGTTIKVLAQQPSTKYDGKAFGTLISFFNTFNPEDKKLQLLKATPAQKQTFTVSNMPSDLVERMDAKLDDMDVKRTYFLKKLINKFLAGDFDDDFV
Ga0233438_1000249519	F051534	N/A	MATKAEIEQRQSVIRGWLESGINHNSAATMASVRFQISRSVSYDAIRQAQQTIDSSDDGPAESEQDLEPLSILATLQHHFNIAAASGDVPAMAKLVQSMDKARAWRGLKQEKISPLQSPH
Ga0233438_100024952	F032087	GGA	MLPMPPQTGRQVIMKFLQYEIARATTADLLRAANFLEGAREVRRGCRKQRTKARKDQQTGWRKHVDQALLW
Ga0233438_1000249532	F070056	AGTAG	MEYAHMGKSLEKVLKPDGSEVWELVELREPQPEPEVCKPVRKRKPSKPAEETPTSTFDF
Ga0233438_100024954	F083373	N/A	MSTHPFDNSNFASVKLKNVPSYLQTEAADYNLRVAAWFDNYAINAAQIDAAMADQDKLWKMRTAEGWEADEGGWYTPTGISEHDWEHDYGNPFPEEPVWENYKALKRCTAGWRIDDTGWYSPDGQHESEWTGPLPEYTLL
Ga0233438_100024958	F076587	GGAG	MAHAQLISYSYNRGSDLLHVQAIVDDAVQVLPATHLDPPEFDSAPCQAVILWDEPLDHTNAPTPEQVERMLPWITDWCVIPPIEFDDD