Scaffold Ga0233438_10001893

Overview

Basic Information

• Taxon OID: 3300024255
• Scaffold ID: Ga0233438_10001893
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 21860
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (63.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041215	Metagenome / Metatranscriptome	160	N
F055645	Metagenome / Metatranscriptome	138	N
F093904	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233438_1000189310	F055645	AGGA	MFIPWFTKPDTQKKILQVVNLSPNESVLERIEEVHPMRQIAVMSVVQVLVFGFMLLSFWLINLGLGKI
Ga0233438_1000189318	F093904	AGGAG	MSNTTNHEIMADILSMADKDIWNVIFAIQNEFGIENVPSPTGGEHGFIAKLFELRKEARS
Ga0233438_100018933	F041215	N/A	MIHPQLEGKIMTDFERTIKVLEGPWSTKAFPNGEETTKGVISRKITTLYEKDGYLCEEVVTREYRGDDYMDTSVNKRVLKLND