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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024255 Open in IMG/M |
| Scaffold ID | Ga0233438_10000060 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 144634 |
| Total Scaffold Genes | 196 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 132 (67.35%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 48.5847 | Long. (o) | -123.5008 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F040851 | Metagenome / Metatranscriptome | 161 | N |
| F041215 | Metagenome / Metatranscriptome | 160 | N |
| F046976 | Metagenome / Metatranscriptome | 150 | N |
| F055645 | Metagenome / Metatranscriptome | 138 | N |
| F073759 | Metagenome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0233438_10000060128 | F046976 | AGGAG | MGLDRIQNGTARWYVVNTQNLEEYGTNFHKFKGGAEYVIGFHVDKLVFEEDAFGEGEHSYYNSPSLTEASVAALVMKHVNRLNGLSGSFDYITNIEVIDSPFNTPDHPTWRGGAEDLIEEIEDLREYNKNLVA |
| Ga0233438_1000006045 | F041215 | AGAAGG | MTDYERTVKVLEGPWSTKAFPNGEETTDGIINRKITTLYEKDGYLCEEVVNREYRGNDYFDTSTNKRVLKLND |
| Ga0233438_1000006051 | F073759 | AGGA | MTTATFFAKSMVRKAREVNHIIRPQKRKVIETIEFLVLMTLPFLLPFIIMFYASSMRMF |
| Ga0233438_1000006052 | F055645 | AGGA | MFIPWFTKPETEKKVLQIVNLSPDESWIEKIVDVHPMKQVAIMSVVQVLVFGFMLLSFWLINVGLDRL |
| Ga0233438_1000006090 | F040851 | AGGAG | VSKVKCIRLDTGEVLIGFVERTILGNYKIIDAQICLTNTEDGKYEVNLAPWIPFAKEYTFILNSDLVQTVFEPRPQLETNFKVATGNKVRGNK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |