NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247676_1009513

Scaffold Ga0247676_1009513


Overview

Basic Information
Taxon OID3300024249 Open in IMG/M
Scaffold IDGa0247676_1009513 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1476
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001473Metagenome / Metatranscriptome688Y
F002408Metagenome / Metatranscriptome562Y
F005213Metagenome / Metatranscriptome408N
F025071Metagenome / Metatranscriptome203N

Sequences

Protein IDFamilyRBSSequence
Ga0247676_10095131F025071GAGGMIQHSENSRREITNAEAGVVGAVLGFGLIALLLYLAVARYHIRKEQLVEAGLYLFVIAGAVIAPVLRKFTTRGKRNKRPPF
Ga0247676_10095132F005213AGGAGMASSATKMANEPEGTVEERQPDVQLQDVLFSALVTSVCYWTTIFLLAIVGAYLIHWWLTHPGPYAAPANDPWGITTPPWLILPLAPIGVVGSLGHAVWCALRGQRTWKTLITAASLVAVMGCSKLVEVYLSPM
Ga0247676_10095133F001473GGAGMESEYQTVGQMYERLRLMIRQRNDTGFRLAVTDAVLEPRNPFEPANKRRPKSGVAITLILVLVLALIFLYFSFHHAR
Ga0247676_10095134F002408N/AVVAPTVPSEMLLNSTPVRLVGGAAAAKAGLGVLIRDIYRKQDEVFVRFSIENRSSQTLRAGPPAVVSLTGLKFDRSLWAFQNAQLGMEYAGRLKTYDAPIPVKIRQCDPGVAEVGPGEARIGLIALQLPPVKPDAKKTQPTVLKILFPIDRTGNLTATLVL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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