NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247676_1006642

Scaffold Ga0247676_1006642


Overview

Basic Information
Taxon OID3300024249 Open in IMG/M
Scaffold IDGa0247676_1006642 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1732
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001949Metagenome / Metatranscriptome613Y
F020595Metagenome / Metatranscriptome223N

Sequences

Protein IDFamilyRBSSequence
Ga0247676_10066422F001949N/AMRNAAATAADPALLQHDGDPAVSYFNLEFNPQMASSLVHCLNRRYKGTQKFPVTAPDAQGTLIVWARDLQECREHLLNALFDLIFARNRVGAAVTNPPCIFCGGKTQSRGRNSSGTRAWRCMNRNCQRSFVIDRTFRGGINHTTQSKKPAFYQLVFVEGKTIREACDALGISMSAGDRWYQKMFTVRKRIDHKCPCGKELRHRGACRFRQGYLTEKGNTHDENRSAVRSGRG
Ga0247676_10066423F020595AGGAGGMACPDCDSPAGDLRFATSVETHGLDCGPYETFNEEFIVCLECGGRHDAYEWDGTQALREIRIPADRIETAAVRLNQLPAG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.