NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228676_1133119

Scaffold Ga0228676_1133119


Overview

Basic Information
Taxon OID3300024248 Open in IMG/M
Scaffold IDGa0228676_1133119 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 48D_r
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)528
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045129Metagenome / Metatranscriptome153Y
F095485Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0228676_11331191F045129N/AMSIEYIDQPYRDKIVEILSTDDSDERKQSELKLYLLKEEYFKHFSSEP
Ga0228676_11331192F095485N/AESAREWVNYRHFSETVPDVLSLSEYVSTVYKKAVTIDAKPHQWFSERYMADKYLRSDVGIGSDYITNLENRIVKILDKHNSIELHIQKFLELCLTDVQKWKLALSKEALLFLNEIYKGKY

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