Scaffold Ga0228675_1017329

Overview

Basic Information

• Taxon OID: 3300024247
• Scaffold ID: Ga0228675_1017329
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 36D_r
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1775
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031255	Metagenome / Metatranscriptome	183	N
F035552	Metagenome	172	N
F050369	Metagenome / Metatranscriptome	145	N
F077286	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228675_10173291	F050369	N/A	MKITERDLRNWFPADRRFLHFCAKYYGYSFHNDEVVERASHLAVLNVMRLVNRDEEFENEAHMTGIVMSSFRYAILNSYTNSLSANEKNLEVRNESEVTYGDGDDEYSKYQANAIADTKEIDNLIDVVRDYAETNLPYLQRRALMECVIGESSMKELATDTDTSVRKVHLAKQKAIRRIKKFIGVLNENEEKYGKKEADGKYVSPSRSKLQIAIQLEPIRKDETRERDYSKAMSFVNTP
Ga0228675_10173292	F035552	AGGAGG	MKIKDDLLISADLSNLYWVLGELAEKAKEDDDLIKVLLQLEQFVETHKTRTRDMVTYRDTIERARNEYRSLKLKYDGTVEALNLKTKFLSQVMNEKMDEDVNNQF
Ga0228675_10173293	F077286	N/A	MSKLMYTVEWEGDVANYKQDFETIEEARIAMIMHHKRNAIIKVRRMDED
Ga0228675_10173295	F031255	N/A	KYFNEVVAELQSKGTIFGAEYRKKNGEITKINGRFGVSKFVKGTGTSNPNVLTVWDNNRKRYTSLIPDNIVRLTTNKRRYLKTDEFLIENYE