Scaffold Ga0247680_1008502

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247680_1008502

Scaffold Ga0247680_1008502

Overview

Basic Information
Taxon OID	3300024246 Open in IMG/M
Scaffold ID	Ga0247680_1008502 Open in IMG/M
Source Dataset Name	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1529
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	40.4449	Long. (^o)	-87.0297	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006570	Metagenome / Metatranscriptome	370	Y
F007000	Metagenome / Metatranscriptome	360	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247680_10085022	F006570	N/A	LGEHTTREQRRLLNPIPAFLATWTLAGVGAVLGSVLGSRAGKPGLFAGALVGGVLGVAVAVAAVTKLHWLSPEDRFGALAGGIVGFGVAAPIAVTNLHTPVTPVLICGLAGAGLLLGVRAVRSWRQRS
Ga0247680_10085023	F007000	AGGA	MMTRLHLAMLISAFTASVASAQNPESVPRAISLADTLGANFAVTDTLTGKSGPADYDFVVGTWRFTFQARRRDGSFAPAFTGHWVFSRKQTGDQGALIEDHWRPDDASSTWDAGTWTYRVYNPARKIWEMQGVNTNSGAWQPGLMWSAGGDRLLIEWYGPMLVRFRYFAIQPDKFLWRADATFDHGMTWVRDYWTMEVHRVSR

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