Scaffold Ga0247680

Basic Information
Taxon OID	3300024246 Open in IMG/M
Scaffold ID	Ga0247680_1000001 Open in IMG/M
Source Dataset Name	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024246 Open in IMG/M

Scaffold ID

Ga0247680_1000001 Open in IMG/M

Source Dataset Name

Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	469456
Total Scaffold Genes	444 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	356 (80.18%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

469456

Total Scaffold Genes

444 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

356 (80.18%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	40.4449	Long. (^o)	-87.0297	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

40.4449

Long. (^o)

-87.0297

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000552	Metagenome / Metatranscriptome	1033	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000703	Metagenome / Metatranscriptome	928	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247680_1000001209	F000552	GGGGG	MRRKLVWVESQNFQGWGCSECAWAFKPEGLPVGQSIDEMKMHYEGQRDKEFTSHVCGEHPRGTKPPR
Ga0247680_1000001278	F000703	AGTAGG	MLSHLSGHAISRPYGCCNPDRVPFMQIREYQESDLAALRAIHAAQGFDYPLPDLRNPLFVTKLILSKAHEENESHQAELQQEQIIGAALLRLTAEAYLLLDPTAGTPSERWQWLLQLHAATERDAWQRGLEDVHAWLPPPIARKFGKRIETLGWRRDDTWTPYCKRLACTARISGP
Ga0247680_1000001285	F000696	AGGA	MPVVGSSAYNTAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDALLVVPAVAQTDTSLQISITDATAPPNQLPTDLLVPITIWERPSGSSDDFLEMVDLTQHGGLPSRVQDSTLSVWEWRADGIYFLGATQDTQIRLRYAKAYPDFTDATSPVLIRNAQEAVAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAIRREQQSVRRRRPFSSRSGYTPF
Ga0247680_1000001287	F000512	N/A	MIRVLRETHETPENVAQSLRRAGGINRFGEANYRAVWGWNRLAWIGGKFEERDPETGSLLREVVELRQEPKYPAVNRWHIERWVPPEVYGSPRFWYAQTVERENGVSIPALGPYPSRGEYEHCFTLERPRGEFLQLTPAAADHVARAIEFSRHLPGATKRRSVNEREEREERAYEAWAYDQLDDAVPAFHKQPFVSVISK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247680_1000001

Overview

Ecosystem & Geography

Associated Families

Sequences