NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228673_1023882

Scaffold Ga0228673_1023882


Overview

Basic Information
Taxon OID3300024242 Open in IMG/M
Scaffold IDGa0228673_1023882 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 91D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1084
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073278Metagenome / Metatranscriptome120N
F085543Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0228673_10238821F085543N/AFKDGIKYIKGIKIISSLLFCIIISAQDIKINDIKNSIQTGPLVGNRNVGFGLKNILEEVVQDQDYNLNDRSKNVLDVELIYFDVKRTQSNVALYSKSSSQTEIIAIAKYKKKKVKVKGASKDITTSLILLNEQGEFTQNSVSVALKKLSENIIRKLKL
Ga0228673_10238822F073278N/AMKKLLFLLLPLFCLAQDLKLDHSYTNAEDFAVGDTITIKFNTIQVTEDVDPNLYIFDYEYNNKLLQKIAHRFKVTDNSANTNAQTSLTHWDGYKYKVLSTYDEDNLSAQYLHGWFNRTQVEGDTNSYPTDNDWSVERITIQDGVGITYNNTLIEVDFKIKDKINTNYSNYNNVTHLNWMRAEDNSTSTKYDVNAMQKKITLSD
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