Basic Information | |
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Taxon OID | 3300024239 Open in IMG/M |
Scaffold ID | Ga0247724_1009023 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1485 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oklahoma | |||||||
Coordinates | Lat. (o) | 35.7 | Long. (o) | -98.594 | Alt. (m) | Depth (m) | 3933 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F028157 | Metagenome | 192 | Y |
F051124 | Metagenome | 144 | Y |
F085645 | Metagenome | 111 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0247724_10090233 | F051124 | N/A | MTKKTDPIEHYLNNAGQGWCIKYVLIAVVEDEDSDQSFYIQCLENQTAAETIGLCEAVSHIQKTKIARAWIQREDDLDDDE |
Ga0247724_10090234 | F028157 | AGGA | MSITDPKFATVLADHDGHSRWICHTDATDIMAAYRQGGVHILVTLDPEGQITVAFKPGRHWEATWSPPITLERK |
Ga0247724_10090235 | F085645 | AGGA | MNHDYAKPEPQPMAGADILTEAYQLVTGPRQDSYSHPYDDYWKVAQLFQSMTGIQLSIKQAVTFMICVKLARIATNDTKGRWHRDSVVDAAGYLACLSMVHEHLEDMRNDAVTRFKDK |
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