NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247724_1009023

Scaffold Ga0247724_1009023


Overview

Basic Information
Taxon OID3300024239 Open in IMG/M
Scaffold IDGa0247724_1009023 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1485
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.7Long. (o)-98.594Alt. (m)Depth (m)3933
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028157Metagenome192Y
F051124Metagenome144Y
F085645Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0247724_10090233F051124N/AMTKKTDPIEHYLNNAGQGWCIKYVLIAVVEDEDSDQSFYIQCLENQTAAETIGLCEAVSHIQKTKIARAWIQREDDLDDDE
Ga0247724_10090234F028157AGGAMSITDPKFATVLADHDGHSRWICHTDATDIMAAYRQGGVHILVTLDPEGQITVAFKPGRHWEATWSPPITLERK
Ga0247724_10090235F085645AGGAMNHDYAKPEPQPMAGADILTEAYQLVTGPRQDSYSHPYDDYWKVAQLFQSMTGIQLSIKQAVTFMICVKLARIATNDTKGRWHRDSVVDAAGYLACLSMVHEHLEDMRNDAVTRFKDK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.