NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247724_1008336

Scaffold Ga0247724_1008336


Overview

Basic Information
Taxon OID3300024239 Open in IMG/M
Scaffold IDGa0247724_1008336 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1550
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.7Long. (o)-98.594Alt. (m)Depth (m)3933
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046332Metagenome / Metatranscriptome151N
F091313Metagenome / Metatranscriptome107N
F091933Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0247724_10083361F046332N/AMNQSAQVSSSGHNRHTGMVSQGPLINGWCHERDQLVRRLIKLVNDVFVDDQYPGNNLVWVKPMREIADAIVTLDPSWRLECVTERYKCMVIKHPNCFCDRPITRTNM
Ga0247724_10083362F091313GAGMATQSNDNSSTPQYRLIDGRYKIVPQFLQPTDSKVGEIIDAMTKCQRLSYLFPNRDNLAEQFVNLITKFVHGNFEDPRDFIHEMRDVLHQIHLYDDDWELKVRTSSDGHLIFRHYNCKCDDIIQHESVSSSQQ
Ga0247724_10083364F091933N/AVCQSLMERNNSRRITFENFKGGLKIVLAYTDIAIETLRFNLASGDGYFFNNKNWLNLVQQAKDTYGQILDCYLNESSSRGPFECEVVMVPLLRNLSELERIIQLGNNEMALTTLTAYSNHLAQLIQVPYENWTATFLNTHIFCKQDATYTVFVNTKCQQTLI

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