Scaffold Ga0247724_1006446

Overview

Basic Information

• Taxon OID: 3300024239
• Scaffold ID: Ga0247724_1006446
• Source Dataset Name: Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1792
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.7
  • Long. (^o): -98.594
  • Depth (m): 3933

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017597	Metagenome / Metatranscriptome	239	N
F024477	Metagenome / Metatranscriptome	205	Y
F037570	Metagenome / Metatranscriptome	167	N
F057095	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247724_10064461	F057095	N/A	NVSQYILVHYFKIDDLIKKESYPLKEVITFHNKRCRIQKSKDIATLEKVAIANRLLIKTLSEEIRNALKEQLALVSKVGSTFTNLSLMYTYIENNDSSLQSEAKSGQWSNEYQET
Ga0247724_10064462	F037570	GGA	MNIKKLDLLKIRNLKFRASQRQVVIDRLLRKKDPERDLWKVSIKTLIILAKIKFRCEELERISENLQQTVINGY
Ga0247724_10064465	F024477	N/A	VSYDIIKNSSKVSSFELLIKSITLIEKVEDFYKELDQITSYRFKCHGKPDPDIYYMKDIIKIRLIELERLQTQRINELIKLSQ
Ga0247724_10064466	F017597	N/A	MKKVFRSGKLLIKLAIKKKELIKITKSSKSTLIKTEMIARILITALKVKQVIVTRFQVNQTNNLQLWGQSPNISSA