Scaffold Ga0247724

Basic Information
Taxon OID	3300024239 Open in IMG/M
Scaffold ID	Ga0247724_1006017 Open in IMG/M
Source Dataset Name	Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024239 Open in IMG/M

Scaffold ID

Ga0247724_1006017 Open in IMG/M

Source Dataset Name

Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	1870
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

1870

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.7	Long. (^o)	-98.594	Alt. (m)	Depth (m)	3933
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.7

Long. (^o)

-98.594

Alt. (m)

Depth (m)

3933

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007918	Metagenome / Metatranscriptome	342	Y
F008991	Metagenome / Metatranscriptome	324	N
F010534	Metagenome / Metatranscriptome	302	N
F014823	Metagenome / Metatranscriptome	259	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247724_10060172	F008991	N/A	MNLTVKITEQVEKKLEVVLKGKYDNRTIWMYYKVSLQMLRDIIGNLIACHHTTHPLAEKDLYYEQNRVQIVDWIQWIQNRTSSDKLVDLDRLLSKLIKDKAENLVEALTEENPSDRMTTLSMLQMSIQMALFTEVQQLLRSPIVIRFCEENGWTI
Ga0247724_10060173	F010534	AGAAGG	MSDRIGEKQETIMNLIDQQIKGALKDQASRLEILQERIKDAIDIGTTEHSQGIKQVMLFVTKAHVQAWIASLKHKVDTAGDDCEICDLEKILGEESLEIAEAVKVALNNRNEEARKRVLGELLEETTTKIEALSVRAPQVPQP
Ga0247724_10060174	F007918	N/A	MGDTTLEESDPFLKQELEDIKQELLSILANVESVTEAMNRAILKEDDRREQFNTLCSLINHSFGENIEMIEKRKDDLKEIDPSLQEIDCKLSTRMERLREVAIKPDLKSMKIEMEKVLSQQRIEKFQTNPQQEERRPQKG
Ga0247724_10060175	F014823	N/A	EDVREGSQAADELTSVVAQIIYKEIKRRKEFRSLLVSVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRMLIEDIYDWKVYRQSRSEKEMENLHPIATTEEKRDLPESLET

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247724_1006017

Overview

Ecosystem & Geography

Associated Families

Sequences