Scaffold Ga0247724_1004246

Overview

Basic Information

• Taxon OID: 3300024239
• Scaffold ID: Ga0247724_1004246
• Source Dataset Name: Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2286
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.7
  • Long. (^o): -98.594
  • Depth (m): 3933

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032253	Metagenome / Metatranscriptome	180	N
F048095	Metagenome / Metatranscriptome	148	N
F091311	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247724_10042461	F048095	N/A	MSQSETQKSFQDGLNAVQDLTIRSILANSQESRNRGNLYHTSTDYYKQAIRHAKNTCRDILRTVTIDSDIAILTLIYEANIATLENILEATDFEMKSKSLKLFYDYLERIKATEFREWKDQMIYLPIRPMSASPLWNGIIAEE
Ga0247724_10042462	F091311	N/A	MVNNKTTIKKNREITEVADETFYRHQRYLEFIRKSLTDILKVIRKGTTKNRATKETRSCNIRFIEFAQEINDQIPSENMTEDDKISIKIILDLFYRISIALEIKSRVKLMKTLKRLAREVFTLSLRSRKSWKKKLPRFLIANKHVSI
Ga0247724_10042465	F032253	N/A	MVAINKLPHSVQIVIAPIAEQAQTKMVEMILQYESALLQNETLGKEDLITPIRFDVDSSNPVVISPEIRKIIATSLNELQATLYMIDMADQIVSMISQSDFNKGTTATAIEAMKRLATDSKNIIDLPELKIGETIEVPISSLTDPIGLLNATGIAEILLQR