Scaffold Ga0247724

Basic Information
Taxon OID	3300024239 Open in IMG/M
Scaffold ID	Ga0247724_1001639 Open in IMG/M
Source Dataset Name	Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024239 Open in IMG/M

Scaffold ID

Ga0247724_1001639 Open in IMG/M

Source Dataset Name

Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4143
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4143

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.7	Long. (^o)	-98.594	Alt. (m)	Depth (m)	3933
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.7

Long. (^o)

-98.594

Alt. (m)

Depth (m)

3933

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026196	Metagenome / Metatranscriptome	198	N
F045530	Metagenome / Metatranscriptome	152	Y
F061527	Metagenome / Metatranscriptome	131	N
F075720	Metagenome / Metatranscriptome	118	N
F100357	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247724_10016392	F061527	N/A	MSDYFEQAFSEILSAIKRLTIKIGTAIRIEQQKVPADPSIRTVHYYHMIIRNKIDQLSSRVAIMSFKTDQYCLLKVYGTLLIMVNRALGESNSKSKYVQLKLLHRMLGDFENNSTFSYWKDHVILGDRAVRETDG
Ga0247724_10016393	F075720	GAG	MVNQEDRNFKLFIGGLEMVLGLTKTAITILDCNLQGIVGLFFGIEQWSIVISFYITAHERSLVRHKDTVTEQGAKLANHLTIPLIKNMETLRDMCREGRSVETLNKLKAFESHLTYLIQKPRDQWAQWQLKEHIYSVIESEFPKIIQKLQSSILDHSWELINGICPSLLS
Ga0247724_10016394	F100357	N/A	MDPHSAKLLQNRIMLKFFTAKLKFVDTNCILCKKIVDTIAIEKTKETQEMDLDLLEKKTKALHVRLIMKRQTLIAGLKLWYQMPIKIYNEEELLRVKRVIKSVIKLTRRAEEMLKREVIP
Ga0247724_10016395	F045530	AGAAG	MNSPSTMIKSITEKLEFLNNMEELYQKVQEMLHYLGIKSPSKPDFNYYSELIKQRKQDLAFARWTIQRQYRKWFMVHMSKTGLIKMYKSKEQNRKVYNTAITKEGTRRQVDEEGPPRKIVSGIYTGQKIQLN
Ga0247724_10016397	F026196	N/A	MWPTRMSEPSNSCNNITFSCEKNTIGFNQPNGKYFTSLGLWQRRDKLVEELIDLVNATRVNKSEADSIKIQEYSKIQSIIEEQREIDPDWHLVVRQQGEGCLRVSHYDCYCNSGNDSRCNHNTVPLVKPRTLRDVTEIVKSIQETMNAINTNISFDENTGT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247724_1001639

Overview

Ecosystem & Geography

Associated Families

Sequences