Scaffold Ga0247724_1001072

Overview

Basic Information

• Taxon OID: 3300024239
• Scaffold ID: Ga0247724_1001072
• Source Dataset Name: Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5526
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.7
  • Long. (^o): -98.594
  • Depth (m): 3933

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026798	Metagenome / Metatranscriptome	196	N
F038078	Metagenome / Metatranscriptome	166	N
F039102	Metagenome / Metatranscriptome	164	N
F045533	Metagenome / Metatranscriptome	152	N
F045559	Metagenome / Metatranscriptome	152	N
F055422	Metagenome / Metatranscriptome	138	N
F057099	Metagenome / Metatranscriptome	136	N
F062460	Metagenome / Metatranscriptome	130	N
F073066	Metagenome / Metatranscriptome	120	N
F085120	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247724_10010721	F055422	N/A	MNNWRFRRRTFPLTRREAHSRVEAIPIANIDILLRSIIDVMNEIRPTDDFDAILATRLYYAVMCLKRFFPEWGISMQPHHLRNASPPNRDRNPPDMNRDSSDIENYSETEPLITEV
Ga0247724_100107210	F026798	N/A	MDKSKEKLISHNRTEESSRSKRGNNVNIDKVLDENNQLTTIEKLALKRGIERVNRRRDSQQAKIIRMVNLLDVKQNFQDRNNQLKLQMLFNTVLKLKRVYPSKSAMWIAPSNNTLPPYKSVRLENKLLKRGLRKKCSSYPNKEKIIENWYRLMKVQESL
Ga0247724_100107212	F038078	N/A	MAAKDEKCTVEMKKLKRESIERFFSLINFIFFMSEEEDITLLRYLHEAKAKVLANSEYWSLVDYIGMTIGRMFRCIDTINVEEKWDSKSNKEWFHEMIKSMNTLKDLHPQWQLTKQDVDRYSTTCPCSQCSTEEGRKDAISSSISKLNI
Ga0247724_100107213	F045533	N/A	MAEKPEDNILSSDQRTVNEKEELVYRLLCLINLAFSQVGKRNEDYLIFQQIHETKLKITRIDPSWSFYDSNDYLINKILRYINAINSNKEWNHEDNIKLFTEVRKNMIVLKEHNAYWFIDKNSIESHNPFLCHGCRKLKEEK
Ga0247724_100107214	F045559	N/A	MDLTSKSIKQTVQASELRKDVAKENYKYVKLTGISNVINSLRDTDFSNESLMHHRMNRIHVLKWKIKDIDPNWHLTDQIALMEHQILDLLDGIDHMKPWNEVGNKLKYMALFSIIENLRKLHPRWGIHLESLETPEKNHWCKCYKCHEARMQKYKIVIQDNPET
Ga0247724_100107215	F039102	N/A	KDQEKERLIRNLFKAIDNLDSTESKETISQAATRIYHLKREIIKIDPTWRVRDPYNYYVHRVLSLLDGIDTRENPNVHNNQELYLKLFHETRMIRKTNQSWRLNVPRLVEFMTETSKVMYPDKIEPMETEEVPKPSSNN
Ga0247724_10010722	F062460	N/A	MNLEKSIIEAVTTAVREIRQEFCIEKQVKSLMKIYDAIVVKDNEISTESSLKTTRKRKRSISHE
Ga0247724_10010726	F057099	N/A	MKILRKDWELINKIAWNILNLKLENSKKTLNLGSSKDAFKLLGILNTPVFVHILISSLCRTINLIRPETSEVDIVEIANRALLIMREIKKRRPNWKFQFCPNNLANSKETLKKQKSNRKYFSKISRLKNFLIINQILSQIEVDKNYEENSHLFEALKGNKREGKNSKLKWLFYHKVPELPDLTEYR
Ga0247724_10010727	F073066	N/A	MEEDLRKIHLEDLLKTLEDSDKDKKIEICNIMKEMVKEEIQEAKRNQDNDITHFLDKLKELLEKTINRYSE
Ga0247724_10010728	F085120	N/A	MNNQARIIQLLNRLENMLKIEMEKARTDRDKDAIKLLEKLHNLIKKTEANYSAQKH