Scaffold Ga0247724_1000209

Overview

Basic Information

• Taxon OID: 3300024239
• Scaffold ID: Ga0247724_1000209
• Source Dataset Name: Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14832
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.7
  • Long. (^o): -98.594
  • Depth (m): 3933

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006300	Metagenome	376	Y
F011293	Metagenome	292	Y
F014256	Metagenome	264	Y
F020893	Metagenome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247724_100020913	F006300	GGAGG	MKWQYMLEDWLKAFVAGSVAVLITSDYNVEGALKAGLAAVLPLIYAWANTKDHRYGRK
Ga0247724_100020915	F020893	GGA	MPTEIYVALISATAIIIAAGLPAWLIERARKENTQDHAYVRKILTRVERKIDNHLEDHRNGVTRRIGTQKGKVSDVD
Ga0247724_100020921	F011293	GGAGG	MAGSRPDPGDAAYVAWQLTKNGDRMAQYGHPWDDYTMVRRIFGVLTNFKHNLTVQEAIMFMVAVKLARLMTSLDREKLHEDSLIDAIGYLNCLHMVDAKDNLVDAPLHIVGDMWIDK
Ga0247724_10002095	F014256	AGG	MPDQLFKTGYDQLVSTLQAITGLKVFDDPRTLNPPCALVEAPTISLNTNVNADMEFRVVIIAPGIGDNRTMDTLLDTADLVREAKIGLTAARPTTVSYGGMDYSAYELTIRTKVSP