NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247724_1000192

Scaffold Ga0247724_1000192


Overview

Basic Information
Taxon OID3300024239 Open in IMG/M
Scaffold IDGa0247724_1000192 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15636
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (83.78%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.7Long. (o)-98.594Alt. (m)Depth (m)3933
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000684Metagenome / Metatranscriptome938Y
F000808Metagenome / Metatranscriptome882Y
F005092Metagenome / Metatranscriptome412Y
F026861Metagenome / Metatranscriptome196Y
F029721Metagenome / Metatranscriptome187Y
F081257Metagenome / Metatranscriptome114Y
F083931Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0247724_100019223F081257AGGMKLLSYTAEKDNTLVSVSNRLMVSEYQINDLLDSLVAHGYTIESVRVDDGDLSQHWEG
Ga0247724_100019226F029721AGAAGGMRSYSIEDLLIDQYYRPISLARRYNGGTINYAEKRDDVYLSEGYEAYRIRYNGDNWATVAVKVSDL
Ga0247724_100019227F026861GAGMKLHEFQELIRAQQKAQQLTNLEKIATIVKTKEKEKK
Ga0247724_100019228F083931N/AMTNATYTDYPFTVNGVNFISRVYTHSELLSQIQSLPEGVFAQLNQEAVSEIIGDPSLLTSDELLLELDRVNEGGTHAFILLGENN
Ga0247724_100019231F005092AGGAMDKLEYALRQIANCDLCLGKGVHGWANDEDYDFEDCICNPYGIIFDHDGEVIWDNGLLSEPELLRSMEAI
Ga0247724_100019233F000808GAGGMDYTYSLTTSYDGKLVNTLRVSDMLEAVDAWTKCVDFGDAKEYATYNLSDPTGKMYTKTFYRSGEVSIR
Ga0247724_100019237F000684AGGAMTLGGYTYQVGDLFTTSKTGVTGRIEKFVPMRQNVTKVMLRLSNNQTRFAMVKTY
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