NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247724_1000008

Scaffold Ga0247724_1000008


Overview

Basic Information
Taxon OID3300024239 Open in IMG/M
Scaffold IDGa0247724_1000008 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)149533
Total Scaffold Genes215 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (15.35%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.7Long. (o)-98.594Alt. (m)Depth (m)3933
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034854Metagenome / Metatranscriptome173Y
F050746Metagenome145Y
F079617Metagenome / Metatranscriptome115N
F093343Metagenome / Metatranscriptome106N
F098951Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0247724_1000008193F098951N/AMKKVGKITNTWKRALQQIRSNQLNEAIETLDECLMILALATEDNTEDLDGVSIDLWKTRVWVKLEDLDAVPAYDQYI
Ga0247724_10000082F079617N/AMKTEETTAAVAAPASEKSKGRPVVATSKRQQRLAEKAARAAANGGVVKRGRPSTKKVETAPTEA
Ga0247724_1000008207F093343N/AVVKKTTFLILLLLCFITGYGQTRRPKSTKKPTIQDVIEEKKTPEDILKEIYKARLDSASQLSYSCIQMLVETKIELDSVRKHNQTLYVIIDRQLDTLESARNKERRAIKVMLKEHYKKRSWVKAFIGQTVFVIGGVGAFITGAWVPIGMGVLAVEIFLVLESRYSEVKLEDNKQEVKRYK
Ga0247724_100000856F050746GAGMISLIKLLHEVLIDEGGNVFKGTEFDAQDIVLDNIKPTVEKFVSDLSKIFPNKKATFTPLTDKSNWLGSTGSKPKSGDVDLAYSSEHLFKDGKADTNGWGINQNEYDALYEKTKKSSRTATDEAVQTNALIRLIVSKINNAGSDIYASDKAANGGTIHFSYPQYTPTGEKLDSRAQLDIDTGDMDWLKFRYNSELPEDNPEIKGLHRGQLMLAMFAATGYTFKSGRGFIRKETGDVIADKPQGALEVFNQEYQPTQPLTLEIINNYDKLMSYIKTNLKPEDQTKTLEMFKEALRRANAYVPDNI
Ga0247724_10000089F034854N/AMTVQELIDQLTELKNEGFGNTELVLSITDHTDWTYNLDFPGFDISNVYDIDEEFDSDKDYGVCEVSI

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