Scaffold Ga0247724_1000008

Overview

Basic Information

• Taxon OID: 3300024239
• Scaffold ID: Ga0247724_1000008
• Source Dataset Name: Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 149533
• Total Scaffold Genes: 215
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (15.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.7
  • Long. (^o): -98.594
  • Depth (m): 3933

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034854	Metagenome / Metatranscriptome	173	Y
F050746	Metagenome	145	Y
F079617	Metagenome / Metatranscriptome	115	N
F093343	Metagenome / Metatranscriptome	106	N
F098951	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247724_1000008193	F098951	N/A	MKKVGKITNTWKRALQQIRSNQLNEAIETLDECLMILALATEDNTEDLDGVSIDLWKTRVWVKLEDLDAVPAYDQYI
Ga0247724_10000082	F079617	N/A	MKTEETTAAVAAPASEKSKGRPVVATSKRQQRLAEKAARAAANGGVVKRGRPSTKKVETAPTEA
Ga0247724_1000008207	F093343	N/A	VVKKTTFLILLLLCFITGYGQTRRPKSTKKPTIQDVIEEKKTPEDILKEIYKARLDSASQLSYSCIQMLVETKIELDSVRKHNQTLYVIIDRQLDTLESARNKERRAIKVMLKEHYKKRSWVKAFIGQTVFVIGGVGAFITGAWVPIGMGVLAVEIFLVLESRYSEVKLEDNKQEVKRYK
Ga0247724_100000856	F050746	GAG	MISLIKLLHEVLIDEGGNVFKGTEFDAQDIVLDNIKPTVEKFVSDLSKIFPNKKATFTPLTDKSNWLGSTGSKPKSGDVDLAYSSEHLFKDGKADTNGWGINQNEYDALYEKTKKSSRTATDEAVQTNALIRLIVSKINNAGSDIYASDKAANGGTIHFSYPQYTPTGEKLDSRAQLDIDTGDMDWLKFRYNSELPEDNPEIKGLHRGQLMLAMFAATGYTFKSGRGFIRKETGDVIADKPQGALEVFNQEYQPTQPLTLEIINNYDKLMSYIKTNLKPEDQTKTLEMFKEALRRANAYVPDNI
Ga0247724_10000089	F034854	N/A	MTVQELIDQLTELKNEGFGNTELVLSITDHTDWTYNLDFPGFDISNVYDIDEEFDSDKDYGVCEVSI