NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228655_1120722

Scaffold Ga0228655_1120722


Overview

Basic Information
Taxon OID3300024236 Open in IMG/M
Scaffold IDGa0228655_1120722 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 67D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)544
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051941Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0228655_11207221F051941GGAMATSFKNMIYDLTPTASEQTVYGIPTDSHSIINAFYVNNTGGSSINIEVRLDRGPGRNYVANQTIVFSTPLTSGQYLNLLTGPLVLEGGDKLVFTTNTTGRVQGTIAAMQVNREDQE
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