Scaffold Ga0228655_1006895

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0228655_1006895

Scaffold Ga0228655_1006895

Overview

Basic Information
Taxon OID	3300024236 Open in IMG/M
Scaffold ID	Ga0228655_1006895 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Monterey Bay, California, United States - 67D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3101
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.8313	Long. (^o)	-121.9047	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022883	Metagenome / Metatranscriptome	212	Y
F101148	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228655_10068956	F101148	N/A	MTTKISITTAVKILNSNKDFIFYRLENNRVVDFTLTNDISRFRSRYNNKFKILDDIKKQIKTNLKIEL
Ga0228655_10068958	F022883	N/A	MNETIQKLLDYANVKDDWYIRSQIGILKQQIALEITKAELKTVKELNNFIKK

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