Scaffold Ga0228655_1002521

Overview

Basic Information

• Taxon OID: 3300024236
• Scaffold ID: Ga0228655_1002521
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 67D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5396
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011489	Metagenome	290	N
F013089	Metagenome	274	N
F022880	Metagenome	212	N
F030437	Metagenome / Metatranscriptome	185	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228655_100252110	F013089	N/A	MGQSKIKTIQPNGTYDSQNGLMYKFEIELESGESGEVSAKSENRWSVGDEVEFEVTPSKWGDKMRLSKPGFTPNQSKANNPDIQKRIDASWAIGHAINQESDPEKILEAAEFLLSIRSTLISKL
Ga0228655_100252112	F030437	AGAAG	MSHSQEENWVTGKTHTRSVSAYRTSVWTPVDEEDLDNNRQKYIDAGWKSYCWTKGYGGGDKHFLSKLPRDEFKELIYVKMDYPNFCLFYDINE
Ga0228655_10025213	F022880	N/A	MFFVTAQKRTDRLNICKGCEHFVDKTKSCGDLVTEAFTDSDLCGCHMPTKTRLKVASCPLGKWEAEIKQADLEAIKTFLKTENQFRTNGQLAKLYSKVTGTNTQASQCSSCNRRMLQELQKLINETE
Ga0228655_10025214	F011489	AGAAGG	MNSGSRKGWNSFLTKHYSKLVRIARRWTDSPSDLVHHTYLRCLDKRFPDGDNENPLGYFVKAMYTEATRGKFKDLYHVTDANPKEQTFESDWTKAIQREQMQLILDRLSWFDRTIFSLYLQGWNMADVSRRSSIGESTLYRSLHITRKILKDVLRNGTKED