Scaffold Ga0228655_1000388

Overview

Basic Information

• Taxon OID: 3300024236
• Scaffold ID: Ga0228655_1000388
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 67D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16199
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (34.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019811	Metagenome / Metatranscriptome	227	Y
F020519	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228655_100038811	F019811	N/A	MSGFNQFTKSSLIHCIRVIGEPASIGGNQFQAAFDESSMDVTRHMYGDEDEVTTSAVCIKSALSNAPRVGETLIRVQQRKTYIITEVQSDVESYEITLRAKDA
Ga0228655_100038813	F020519	N/A	MPATSDEEVFNFEGNLEQSFYDFLLDNGIELATANDPQRLGDDFVGVQIEIGGVAEDEHMSEKPSGDLEYDHYNYTASITIHTDRNENATPGASFSRYHRELVAKVRNLLSISRAAQVASLNDKIDYYWINRLVASATSYTAYDSSYDETILSFEGDFSILTSAWPSL