NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228665_1067220

Scaffold Ga0228665_1067220


Overview

Basic Information
Taxon OID3300024235 Open in IMG/M
Scaffold IDGa0228665_1067220 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 79D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)739
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007985Metagenome / Metatranscriptome341Y

Sequences

Protein IDFamilyRBSSequence
Ga0228665_10672201F007985N/AYYVSMLSKAAQATATITPYTPPSKASKKLSVVRNILIREMLEWAGSFVHSMTPSVDPCWMYSVEDANGFSDAGDTWYEDLEDVTYGNNLEWEDAKDDYEGAVSNFECLFGDYNSVTSVEGLSDMLNSMYHTMSDHSSETDNYIGCVRDSIKRMCEGNDNIAHSYDHPSRRTTISFSGNVDAMYKAYMLERNS

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