NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228665_1030226

Scaffold Ga0228665_1030226


Overview

Basic Information
Taxon OID3300024235 Open in IMG/M
Scaffold IDGa0228665_1030226 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 79D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1111
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031424Metagenome / Metatranscriptome182Y
F071304Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0228665_10302262F031424N/AMSKIPKIYKHGIEITKPWSKEMYAYNDSVRSFMTNEIKACINMLDNEDTANKLAGIINPSKYGFGYELEDMKEDMLSNAEHFENYWLAEIWDELIEANFVEPNFGEGNEVFHIIGFESKEEILELRTKFA
Ga0228665_10302263F071304N/AMKKLKSKLLTYLFTDWVKTEEDVETLIMTRNMIEQRKNQIVGHTPILGFRMHGNSNI

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