Scaffold Ga0247664_1007141

Overview

Basic Information

• Taxon OID: 3300024232
• Scaffold ID: Ga0247664_1007141
• Source Dataset Name: Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2549
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 40.4449
  • Long. (^o): -87.0297

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007754	Metagenome / Metatranscriptome	345	Y
F095074	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247664_10071411	F007754	AGGA	MRNYLTSIVVATALAAVFATPANAQVVLGGQTWTNTGTTLSLDAVVPGGNQPLNIQCVICGDHQPQQDSTFGYTDFHNSGNLSDAIFFSTNVIGGGNPGVDTVGIGYDGSFLRAFLAAGGDPSLQFSIGIDVNDTGTPQTLEAFALLNLTQHTVLAQYSLLQPGGALIPSQNNGTGFPDYTLSGFNINLGTDIQAGDQLIFYARISGANDGPDSFFLVPQQVPAPIAGAGIPGLIAACGGLVAFARRRKKQQEQGVA
Ga0247664_10071415	F095074	GGAG	VKTQRHPEIDALLNQIAAYRLKTGIGRTQFGLIVANDGHFIRRLEGGRLPRLPTIDRVRALIRRKPAKTK