Scaffold Ga0233399_1004305

Overview

Basic Information

• Taxon OID: 3300024231
• Scaffold ID: Ga0233399_1004305
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 43D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4970
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005194	Metagenome / Metatranscriptome	409	N
F009788	Metagenome / Metatranscriptome	313	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233399_10043053	F009788	N/A	MTIETAEYEVNVTLAAPEGVNDRYVAFELIEGTQDLANATIELPNNGDYPYKITNATTLGGTEGIEIHRGILRLKQPKEIVYSYTDEQNTHIYE
Ga0233399_10043056	F005194	GAG	MSKSLTIKNIKTIIEGIKNEHPQINTILKGNIWDVDLTKDVTGSYLIYDIVNITPNGFNGIDYSLDIFLCDNVTEINTESNEVSVQNECCLIALDIMSIFENYNKASYADKDIALVLNKNWSIQPFTERFDSLYS