Scaffold Ga0233399

Basic Information
Taxon OID	3300024231 Open in IMG/M
Scaffold ID	Ga0233399_1003206 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Monterey Bay, California, United States - 43D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024231 Open in IMG/M

Scaffold ID

Ga0233399_1003206 Open in IMG/M

Source Dataset Name

Seawater microbial communities from Monterey Bay, California, United States - 43D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5755
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5755

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.8313	Long. (^o)	-121.9047	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.8313

Long. (^o)

-121.9047

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F040106	Metagenome / Metatranscriptome	162	N
F042905	Metagenome / Metatranscriptome	157	N
F060814	Metagenome / Metatranscriptome	132	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0233399_10032061	F060814	GAG	MPLIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDEHQLDKAKDFIRSITDQGILVDEMLIGPTDFLASENFYEVMPHLEDIINENSPILAFVSTLIDGDLERFVKYISNNINIDTEIEIGIATNPYNFFSIPYLERTKKALAYLDENLEHEITYTFVINIRDYNLDYAELHAYAI
Ga0233399_10032062	F042905	N/A	MLVHLNSTYAGYYSYDAEKSPTNIDFLRTEINLDILHGCSQMCPGCFIPRKNLTKADNLETLYNLLIEGSYHPDEITIGPTDIFDAENFSEIMNHPYMEKLYGISGVGFTSTLLQPYSEVKEKLAKIWSLYKNIHRVPDIDFKIVLDIDKYLDNDLDEWYKNLELFNYGSVQFRVNYHKDVFKRIGYNDLCQKVFDDFNAPIIITPSFLTDRNVRGKVDQHLANFRRDMIEQKIDDKWLNLYTFFDAKFNGYGCQNYSFYNNKLYINPFLYDVIIQRTSQFETTMDNNTLYDNIDYAQQVDDCNGCQYMMSCAERNIHLYMESRGLENCVALKEYMYASH
Ga0233399_10032065	F040106	GAGG	MTMQKSYCKQMRYSGPESLAPSDATKFDVLIQMEVLSGCDHGCLGCFVDKNIDPAMNQMIIDRAKELTDGIKRTGLNLREFVIGPTDFFTAENTESVLNNPTVQEIMREHKKARIAAPAKFDKVSMDKLKHIFSILDDEDKYRREMIIEFIMPIGRVKEMLDDDDYYKEVMRKVEFFKTGTPKQMDWSWTLQASNVVGKSIDKEVYNRIINKSVDEYETIVEMNPAFSRARSQLVKRKNLFAWNDFLGRVIDKDNANETVMSMANLYCNSINFVGLTIVPGENGPTTHLNVMLHEQAFFLDNKNLDVTGLTFEEILQRKNELVTKGIHKLSKIKDCSGCQFAIACSSRLIGEAQESLNVKGCVMNKEVLTHYNPFDFTWNDDAKEQLGAIS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0233399_1003206

Overview

Ecosystem & Geography

Associated Families

Sequences