NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233402_1102531

Scaffold Ga0233402_1102531


Overview

Basic Information
Taxon OID3300024229 Open in IMG/M
Scaffold IDGa0233402_1102531 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 54D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)594
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015402Metagenome / Metatranscriptome255Y
F057685Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0233402_11025311F057685N/ANAGWLTTCGGCKEREIMANKTPKTDLLKILNTIKEDFEMLQDGSWDLRYSDGTEIEASLDNVDKAIKIVNKEVHGK
Ga0233402_11025313F015402N/AMGKTKNYLGSLDLNEEELNQELYSRGDEEYQYQKWIESKEFAEYVNAELDSTRPRYSEQDISSATRYASEHITIDPSEVGKEVY

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