Scaffold Ga0233402_1013727

Overview

Basic Information

• Taxon OID: 3300024229
• Scaffold ID: Ga0233402_1013727
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 54D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1829
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002858	Metagenome / Metatranscriptome	525	Y
F008883	Metagenome / Metatranscriptome	326	Y
F023856	Metagenome / Metatranscriptome	208	Y
F026889	Metagenome / Metatranscriptome	196	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233402_10137271	F002858	AGGAG	MFIDEKSIYVVDGGDYSVYCLGYTQARTVTNDIMRRDPWGGIPFVLRKDQEISLDDRGNVVMTKSTLDKILFLASDELPEGEQ
Ga0233402_10137272	F023856	GGAGG	MRCRACNRILEESELTKKDAHGDFLDLCGICISAVSSSGVDSETMEYYQYEIFTEDENYDTLY
Ga0233402_10137276	F008883	GAGG	MNFGRYTIWYNHEDHVWDIYDSRKGFKYPEYTINNYSRLLCGLRDKLGFLDTDRNHRRFWRVMRWWSKLRHGLAKSRHGRR
Ga0233402_10137277	F026889	GAGG	MNNVIQDYLALVERTVYTNDIFAYQELEQLEEQYPELADLVYQSAGPLAYDIQNNEVTS