Scaffold Ga0228633_1002435

Overview

Basic Information

• Taxon OID: 3300024228
• Scaffold ID: Ga0228633_1002435
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 41D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5664
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F003188	Metagenome / Metatranscriptome	502	Y
F029450	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228633_100243510	F029450	N/A	MMSGKKLEKYQKIVVKLHFESTQEFEGLFTRKTLSVTRSIVEGISKAMEDNKRSALLFQLTFSNCDEAYEISLPQSQWVQSLQSCLDHLHAKGLADEQIDCWKLLEAAKAW
Ga0228633_10024352	F001222	N/A	MKKLEQVVDKLLSEAAKINFAGHSFVLKVDTNEDPQKKGVKVQFLPTEFGSITPTEQNDIAIELEKRLSTGLEPFDMKVERDRNLKDKTIIGFFIYIEYFDRIIRKALSGQNPSNDGNSNDTSEI
Ga0228633_10024354	F003188	N/A	MIEPRKRIRQVLFSIHPLSYRIKSKGLDKDTMNKKLFIAVIQQLRKIEDRRDFMQEEIGIDMTTYEDQFFNVIENLMKMHFNKEQLALIQMYLYQLVPDKEWDGTITITKDNKDKIVPFKKLEDVWDVITMVSK