Scaffold Ga0228633_1002066

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0228633_1002066

Scaffold Ga0228633_1002066

Overview

Basic Information
Taxon OID	3300024228 Open in IMG/M
Scaffold ID	Ga0228633_1002066 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Monterey Bay, California, United States - 41D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6075
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.8313	Long. (^o)	-121.9047	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019812	Metagenome / Metatranscriptome	227	Y
F074739	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228633_100206612	F019812	GAGG	MDNQRQIEINRAHQYLASKMLERELKRLDRVYYFVVTLIVTTTLGGFIAFINSIWSV
Ga0228633_10020666	F074739	GGAG	MQLFKGPNDLLHGDEHLVELEDWELRERFFSVLRELTAAVDTIEKLKSPKWTPYPEDIEALQDTLEELKYSLKKNC

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