Scaffold Ga0228633_1000035

Overview

Basic Information

• Taxon OID: 3300024228
• Scaffold ID: Ga0228633_1000035
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 41D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37351
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (14.93%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005132	Metagenome / Metatranscriptome	411	Y
F006322	Metagenome / Metatranscriptome	376	Y
F008384	Metagenome	334	Y
F013231	Metagenome / Metatranscriptome	273	Y
F030556	Metagenome / Metatranscriptome	185	Y
F032817	Metagenome / Metatranscriptome	179	Y
F092935	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228633_100003535	F030556	N/A	MANDKVFVGKTNVVTTKFGEIVKVAFGPQDFEVLMNAKNEKGWVNLEMKDKRDGGKYFQLQGEYTGKPKAQAVNDGDDMPF
Ga0228633_100003541	F092935	N/A	MKSTVKERKDSHINSLILERKTAFANLVMAYLKFNVSDALNIVVEKDGNISINGNYYKLDVSDYTGCTENYIFYNPSSGRLLIQKNDVKKIYKLDVNLYDESVN
Ga0228633_100003545	F013231	N/A	METNRNYQNCKLIRNRVDLYLYEMSKLFTKIGIDSTEEEIQEAYRRENEYIDCIAKLDPEKAKNLRSSY
Ga0228633_100003547	F008384	N/A	LKKKTRYNKELVEHEAHLSVEQDAITNELGKFIYQRCIEISGSAFFTNGDDELKQALIDEAVMRVCEKFLHYYKEGGSAANLIITMIYSTMTNKIVGLKWKDKYGQRIKGKVVCIENGEKFTRLVKYVKDDNISKKL
Ga0228633_100003553	F005132	AGAAG	MVDIIFIDDNYLYKNFPLPKRLDRGALLALIQLEQYTSIQDLLGSCLYEDIEAKVLAETLDADEQELFKLVKYCLAMYSARAAISVLRSETARTKNEENKSDQMSLDAISSTVESKITYINKRIVNYILGKTAIKAIATAEGCDNDLFEAEDVYQDSSVFYPKSSTSDSEC
Ga0228633_100003563	F032817	N/A	MAFNCSIILSDIDINCNKRTTGGIKKAILTLQSDITITFNPSDETQVTNVDLLESDTVVFEHNKKDGTTSFGENKNTTNGLGLVATNIVIQSPVVDNKVNKIDYMSRREDIVCVLLHNNDSVSISGWMDGLTMNYEASSGTGVSDKSFVNINLNTESGIASLLLDSKSVFTDQTIFD
Ga0228633_10000359	F006322	AGGAG	MALKKDKKGNITKGRGSGLTGLQKAFLEGVYEKGIESGNKIAKDLGYTNYYRDRRTEGTAFHREVLKLVDSEAKSIEAAKGTNLTKLIAIRDTALANGDMKVAMDAIKIINDMQGYKAPMKVEQTKLDITATIDLTKQPDEEQGYIDI