NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228637_1046421

Scaffold Ga0228637_1046421


Overview

Basic Information
Taxon OID3300024192 Open in IMG/M
Scaffold IDGa0228637_1046421 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 47D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)878
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002033Metagenome / Metatranscriptome601Y
F029449Metagenome / Metatranscriptome188N

Sequences

Protein IDFamilyRBSSequence
Ga0228637_10464211F029449AGAAGVAGRVPIIPGVPTPSDPQCALTYCGRIIAQVDCIKYIVQGTSACIDIQLFNANDQPLNLDTICDIHVQLTNELECVIANFWYPNVPSGSKGYLIDILQFTDTSGVIHNEGLIRICLPSTCTHTSPGNISAEILLTECGGNTGDTGVTGVGPTGTLPTGSAEVFGIPC
Ga0228637_10464212F002033N/AHGQLKTIIEYLKAQRIKQNQNKNLKNNKMSKFNKFFADHGIKIVLALMLLTYFKSCSIDSEVERIKKEQRILTTEIDTLSSQIVNEEEMIFLIKTVPAWKTLRIEEISDKERISINALEEKED
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