NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228637_1018565

Scaffold Ga0228637_1018565


Overview

Basic Information
Taxon OID3300024192 Open in IMG/M
Scaffold IDGa0228637_1018565 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 47D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1431
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005337Metagenome / Metatranscriptome404Y
F041622Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0228637_10185651F005337N/AMNSISPYDLETGHTYYIESYNKGVYTYDVETGLTYYTESNKGVRTNKYRGVINNLNACTWGGHNVLEIGNMIEYVNGQETTSAERDSPTFPGNVFYVHVGTNATEPQYWLFYKPVADYLMTTQVLKQRTRLDKVSIWGLYKQHLGKAEGEGATSGRTPPLRRVWYDYLYRIKRMGYN
Ga0228637_10185654F041622N/AILHAYEVIKKRNNYWGIFLRDKDEIIGNTMVTYEKEDNIDYLLLVAVYINDKYRGRKLGKALIEQTILKNEMQNKTNLVKVVIAGGMPMLKCLLSVFKELNYTIKKYNTTNENIQMLQNILPETAIKIEQSNYESDIWQTLFFDKND
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