Scaffold Ga0228637_1000253

Overview

Basic Information

• Taxon OID: 3300024192
• Scaffold ID: Ga0228637_1000253
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 47D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14875
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.25%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036687	Metagenome / Metatranscriptome	169	Y
F064404	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228637_100025312	F036687	N/A	MNIKHLITILTLGVSVANAQQEYEISFQEIESKYCRNCYGSLVVNKGSITDTIYGGQWGNVVNYKLVKIKDKEYLNTYYNYGFPMGQTVMAYKIHSIEDHNFLEPIFEKTFELYRETHRNYNNVPTNFIFDRNVDVKIKKGIEFDINLKVSYCPEIEGEQCDVLFEESYVDFYNIN
Ga0228637_100025315	F064404	N/A	MINFFGFFKETNHIGISSVGFEKAAIFLRNRDFRVVELWGLKKNEEVNLLYENEEPLWITKDHFLEISSLLSENWHTPFTHVKIELADGGDINYSAASLYVKFPDGEDIKSKTIMLLETMGYYACEKIFDFCTENPDMHLLEFVLGMEPEDITDEFERMKLHTESINNESYLED