Scaffold Ga0228636_1005222

Overview

Basic Information

• Taxon OID: 3300024191
• Scaffold ID: Ga0228636_1005222
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 45D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3195
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016899	Metagenome / Metatranscriptome	244	N
F019812	Metagenome / Metatranscriptome	227	Y
F074739	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228636_10052221	F016899	GAGG	MFREYMLKGTMNPEVQAVFKAAADISNGVFSLKEAANFYKVHPAVIVQFIAESTEYDMIFSKGGE
Ga0228636_10052222	F074739	GGAG	MQLFKGPNDLLHGDEHLEELEDWELRERFFSALRDLTAAADTIEKLKSPKWTPYPEDIEALQDTLEELKYSLKGNC
Ga0228636_10052226	F019812	AGG	MDNQRQIEINRAHQYLASKMLARELKRLDRVYYFIVTLVVTTTLGGFIAFINSIWSV