Scaffold Ga0228636_1003991

Overview

Basic Information

• Taxon OID: 3300024191
• Scaffold ID: Ga0228636_1003991
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 45D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3640
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228636_10039912	F004606	GAG	MKAHRIFTKGQTVYCLLSSFSRPNVLLPIKGLIVDTQWDPVNPLYQIRIIKMYDNMKYLKSNFFDMNFKYEFDNRARKMPIKKEDFKNKSLLEERFNESDRERFYVIVESVMCKKTKNDLQGLFEKVQFYIISKNLKEIRDISSRPFFKGSLSTDSSQEFNIRFKKGDIDIDKYLNSLS
Ga0228636_10039913	F008190	N/A	METEIEFNFIYSKDAIKVKKFLGSVPRNIECISYMDIFNKLTKNDFYQYEPCDAVVSSYLMRQLQTVLGRNTTTSIFYVLGNLNKGTIIGVKKYVESLTDRAIYYNIYHSPDINVNGTAELFKDAVEFE