Scaffold Ga0228636_1001390

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0228636_1001390

Scaffold Ga0228636_1001390

Overview

Basic Information
Taxon OID	3300024191 Open in IMG/M
Scaffold ID	Ga0228636_1001390 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Monterey Bay, California, United States - 45D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6207
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (5.88%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.8313	Long. (^o)	-121.9047	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007304	Metagenome / Metatranscriptome	353	Y
F055700	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228636_10013903	F007304	N/A	MKLDLKIEYLGKKEKKGDTEKDMYNLSFKTYNAQISGKFERSEIRHLIQQLDNAII
Ga0228636_10013907	F055700	N/A	MKTQLQDLKKELRQIEATLHHLNKMEGVTERMKKRLEDRELYIRSIIYNIQ

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