Scaffold Ga0228636_1001134

Overview

Basic Information

• Taxon OID: 3300024191
• Scaffold ID: Ga0228636_1001134
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 45D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6866
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (42.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046916	Metagenome / Metatranscriptome	150	Y
F052477	Metagenome / Metatranscriptome	142	Y
F078426	Metagenome / Metatranscriptome	116	N
F085395	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228636_100113412	F046916	GGAGG	MWRSKRIDAADWLDSMAEEEALPETSERMSEKEAFELAQGAGYDTHREAVERMAALINIK
Ga0228636_100113413	F078426	AGG	MKKTEKEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLIVEYLTGRF
Ga0228636_10011347	F052477	GGA	MSQPDLKTTKRYYRSFMEWAQVCVPMKYMAMGMRTASKEEILGLIREWAETITRKET
Ga0228636_10011348	F085395	N/A	MRTISQFKEDFPELSPQRLTTAYHLLEVVGVSEELQSPSRQSSCDTGAILSQIINNIQENGNYIP